| Issue Date | Title | Author(s) |
| 2007 | Convergence of conoformational Sampling for BPTI in 30ns Molecular Dynamics Simulation | Al-Hausani, Waseem Ahmad |
| 2014 | Detecting protein atom correlations using correlation of probability of recurrence | Fatafta, Hebah; Karain, Wael |
| 2017 | Detecting transitions in protein dynamics using a recurrence quantification analysis based bootstrap method | Karain, Wael I. |
| 2017 | Distinct dynamics and interaction patterns in H- and K-Ras oncogenic P-loop mutants | Sayyed-Ahmad, Abdallah ; Prakash, Priyanka ; Gorfe, Alemayehu A. |
| 31-May-2017 | Distinct dynamics and interaction patterns in H‐and K‐Ras oncogenic P‐loop mutants | Sayyed-Ahmad, Abdallah; Prakash, Priyanka; Gorfe, Alemayehu A. |
| 2020 | Prediction of drug potencies of bace1 inhibitors: A molecular dynamics simulation and mm_gb(pb)sa scoring | Hamed, Mazen Y. |
| 19-Jan-2020 | Role of Oxidized Gly25, Gly29, and Gly33 Residues on the Interactions of Aβ1-42 with Lipid Membranes | Fatafta, Hebah ; Poojari, Chetan ; Sayyed-Ahmad, Abdallah ; Strodel, Birgit ; Owen, Michael C |
| 2018 | Role of protein structure and the role of individual fingers in zinc finger protein–DNA recognition: a molecular dynamics simulation study and free energy calculations | Hamed, Mazen Y. |
| Jan-2007 | Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory | Sayyed-Ahmad, Abdallah; Tuncay, Kagan; Ortoleva, Peter J. |