| Issue Date | Title | Author(s) |
| 1 | Jan-2007 | Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory | Sayyed-Ahmad, Abdallah; Tuncay, Kagan; Ortoleva, Peter J. |
| 2 | Jan-2017 | Computational and biochemical characterization of two partially overlapping interfaces and multiple weak-affinity K-Ras dimer | Prakash, Priyanka; Sayyed-Ahmad, Abdallah; Cho, Kwang-Jin; Dolino, Drew M.; Chen, Wei; Li, Hongyang; Grant, Barry J.; Hancock, John F.; Gorfe, Alemayehu A. |
| 3 | Aug-2009 | Relative free energy of binding between antimicrobial peptides and SDS or DPC micelles | Sayyed-Ahmad, Abdallah; Khandelia, Himanshu; Kaznessis, Yiannis N. |
| 4 | Mar-2009 | Determining the orientation of the Beta-hairpin antimicrobial peptide Protegrin-1 in a DLPC lipid bilayer using an implicit solvent-membrane model | Sayyed-Ahmad, Abdallah; Kaznessis, Yiannis |
| 5 | Sep-2003 | Toward automated cell model development through information theory | Sayyed-Ahmad, Abdallah; Tuncay, Kagan; Ortoleva, Peter J. |
| 6 | Jan-2009 | Poisson-Nernst-Planck models of nonequilibrium ion electrodiffusion through a protegrin transmembrane pore | Bolintineanu, Dan S.; Sayyed-Ahmad, Abdallah; Davis, H Ted |
| 7 | Oct-2015 | pMD-membrane : a method for ligand binding site identification in membrane-bound proteins | Prakash, Priyanka; Sayyed-Ahmad, Abdallah; Gorfe, Alemayehu A. |
| 8 | Sep-2007 | Basin model inversion using information theory and seismic data | Lee, Jejung; Sayyed-Ahmad, Abdallah; Sheen, Dong-Hoon |
| 9 | 1-Sep-2017 | Spatiotemporal analysis of K-Ras plasma membrane interactions reveals multiple high order homo-oligomeric complexes | Sarkar-Banerjee, Suparna; Sayyed-Ahmad, Abdallah; Prakash, Priyanka; Cho, Kwang-Jin; Waxham, Neal; Hancock, John F.; Gorfe, Alemayehu |
| 10 | 2014 | Investigation of Changes in Tetracycline Repressor Binding upon Mutations in the Tetracycline Operator | Sayyed-Ahmad, Abdallah; Volzing, Katherine; Vivcharuk, Victor; Bolintineanu, Dans; Poonam, Srivastava |
| 11 | 2010 | Structure and dynamics of cholic acid and dodecylphosphocholine-cholic acid aggregates | Sayyed-Ahmad, Abdallah; Lichtenberger, Lenard M.; Gorfe, Alemayehu A. |
| 12 | 31-May-2017 | Distinct dynamics and interaction patterns in H‐and K‐Ras oncogenic P‐loop mutants | Sayyed-Ahmad, Abdallah; Prakash, Priyanka; Gorfe, Alemayehu A. |
| 13 | Mar-2008 | On the nature of antimicrobial activity: a model for Protegrin-1 | Langham, Allison A.; Sayyed-Ahmad, Abdallah; Kaznessis, Yiannis N. |
| 14 | Sep-2014 | Intracellular crowding effects on the self-association of bacterial cell division protein FtsZ | Naddaf, Lamis; Sayyed-Ahmad, Abdallah |
| 15 | Jul-2004 | Karyote physico-chemical genome, proteome, metabolome cell modeling system | Ortoleva, P.; Berry, E.; Brun, Y.; Fan, J.; Fontus, M.; Hubbard, K; Jaqaman, K.; Jarymowycz, L.; Navid, A.; Sayyed-Ahmad, Abdallah; Shreif, Z.; Stanley, F.; Tuncay, K.; Weitzke, E.; Wu, L-C. |
| 16 | Mar-2004 | Efficient solution technique for solving Poisson Boltzmann equation | Sayyed-Ahmad, Abdallah; Tuncay, Kagan; Ortoleva, Peter J. |
| 17 | 2012 | Aggregation behavior of ibuprofen, cholic acid and dodecylphosphocholine micelles | Prakash, Priyanka; Sayyed-Ahmad, Abdallah; Zhou, Yong; Volk, David E.; Gorenstein, David G.; Dial, Elizabeth; Lichtenberger, Lenard M.; Gorfe, Alemayehu A. |
| 18 | Mar-2017 | Mixed-probe simulation and probe-derived surface topography map analysis for ligand binding site identification | Sayyed-Ahmad, Abdallah; Gorfe, Alemayehu A. |
| 19 | Feb-2008 | Poisson-Boltzmann theory of bionanosystems | Sayyed-Ahmad, Abdallah; Miao, Yinglong; Ortoleva, Peter J. |
| 20 | Feb-2012 | The role of conserved waters in conformational transitions of Q61H K-ras | Prakash, Priyanka; Sayyed-Ahmad, Abdallah; Gorfe, Alemayehu A. |
| 21 | 2013 | Design of an optical water pollution sensor using a single-layer guided-mode resonance filter | Sader, Edward; Sayyed-Ahmad, Abdallah |
| 22 | 1-Oct-2018 | Hotspot Identification on Protein Surfaces Using Probe-Based MD Simulations: Successes and Challenges | Sayyed-Ahmad, Abdallah |
| 23 | May-2016 | Computational equilibrium thermodynamic and kinetic analysis of K-Ras dimerization through an effector binding surface suggests limited functional role | Sayyed-Ahmad, Abdallah ; Cho, Kwang-Jin ; Hancock, John F. ; Gorfe, Alemayehu A. |
| 24 | 12-Sep-2019 | Conformational and dynamical effects of Tyr32 phosphorylation in K-Ras : molecular dynamics simulation and Markov state models analysis | Khaled, Mohammed ; Gorfe, Alemayehu ; Sayyed-Ahmad, Abdallah |
| 25 | 19-Jan-2020 | Role of Oxidized Gly25, Gly29, and Gly33 Residues on the Interactions of Aβ1-42 with Lipid Membranes | Fatafta, Hebah ; Poojari, Chetan ; Sayyed-Ahmad, Abdallah ; Strodel, Birgit ; Owen, Michael C |
| 26 | 2018 | Hotspot identification on protein surfaces using probe-based MD simulations: Successes and challenges | Sayyed-Ahmad, Abdallah |
| 27 | 2017 | Distinct dynamics and interaction patterns in H- and K-Ras oncogenic P-loop mutants | Sayyed-Ahmad, Abdallah ; Prakash, Priyanka ; Gorfe, Alemayehu A. |
| 28 | 2014 | Investigation of changes in Tetracycline repressor binding upon mutations in the Tetracycline operator | Sayyed-Ahmad, Abdallah |
| 29 | 2012 | The role of conserved waters in conformational transitions of Q61H K-ras | Prakash, Priyanka ; Sayyed-Ahmad, Abdallah ; Gorfe, Alemayehu A. |